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| Common modifications | Conjugation for antibody production |
| Acetylation, N-terminal | BSA |
| Amide, C-terminal | KLH |
| Biotin, N-terminal | OVA |
| Phosphorylation (Ser, Thr, Tyr) | Cyclization |
| D-amino acid | Disulfide bond |
| Disulfide bond (1 pair) | Amide bond |
| Fluorescence dyes and FRET or quenching pairs | Others |
| FITC (fluorescein), N-terminal | Acetylation , Lys side chain |
| FITC, C-terminal or Lys side chain | 6-aminohexanoy |
| Rhodamine, N-termina | Biotin, C-terminal or Lys side chain |
| Dansyl, N-terminal | BtLC (6-biotinamidohexanoyl) |
| MCA, N-terminal | CBZ (Benzyloxycarbonylation) |
| MCA, N-terminal/Dnp, Lys side chain | CMK ( chloromethyl ketone), C-terminal |
| Dnp, Lys side chain | DiMe, N-terminal |
| Abz, N-terminal | Dinitrobenzoylation, Lys side chain |
| Abz/PNBA | Disulfide bond (2 pairs) |
| EDANS or DABCYL | Disulfide bond (3 pairs) |
| Special amino acids | DTPA (diisopropylamine), N-terminal |
| Aib (amino isobutiric acid) | Farnesylation, N-terminal |
| Aminocaproic acid | Farnesylation, side chain or C-terminal |
| AOAA ( amino-oxyacetic acid) | Fatty acid, N-terminal |
| Bpa (p-benzoylphenylalanine) | Formylation |
| Cha ( L-cyclohexylalanine) | HYNIC (hydrazinonicotinamide), N-terminal |
| CIT(citrulline) | Myristylation, N-terminal |
| Cyclohexylalanine | NHEt (ethylamide) |
| Cys(acm), Cys(tBu) | NHS (N-hydroxysuccinimide ), C-terminal |
| Elaidic acid | Methylation, mono, Lys side chain |
| hydroxyproline | Methylation, di, Lys side chain |
| Iso-aspartic | Methylation, tri, Lys side chain |
| Iva (Norvaline) | Oleic acid |
| N-Me-Val | Palmitic acid, C-terminal or Lys side chain |
| Nph (para-nitro-phenylalanine) | Palmitic acid, N-terminal |
| Ornithine | Palmitoylation |
| pGlu (pyroglutamate), N-terminal | PNA, (p-Nitroanilide) |
| Pyro-amino acid | TNP (Trinitrophenyl) |
| Sar (sarcosine) | |
| Seleno-methionine | |
| Stearate (Octadecanoic acid) | |
| Sulfated Tyr | |
| Valol (amino alcohol of valine) |
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